Good mod. Unfortunately it seems to have irreversibly damaged my campaign...I am in end-game, and when I switched the Saints HQ phases to see what it would do, it won't allow me to have the proper building color OR access it as a stronghold. This means I cannot upgrade it or use its functions it had previously, and this seems to be applied to my older saves as well.
If this is happening to more than just me, please add a warning to the readme.
edit: it gets worse... i lost the 'customize stronghold' option for every building