There were a couple parts in SR3 that confused me. The first part was Johnny's funeral. Why did his funeral take place during a bridge opening that was named after the guy who tried to kill the protagonist in the first game?
Another part of the game that I didn't get was during Convoy Decoy/Stag Party. The gang apparently moved out of the Saints HQ to avoid STAG but in Stag Party you go back to the Saints HQ (on a different level) to deal with STAG, but it is implied that the Saints evacuated that area in the previous mission.
Another part of the game that I didn't get was during Convoy Decoy/Stag Party. The gang apparently moved out of the Saints HQ to avoid STAG but in Stag Party you go back to the Saints HQ (on a different level) to deal with STAG, but it is implied that the Saints evacuated that area in the previous mission.